HL_4V5B_116

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

4V5B|1|CB|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_116 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.1665

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V5B|1|CB|C|487
4V5B|1|CB|G|488
4V5B|1|CB|G|489
4V5B|1|CB|C|490
4V5B|1|CB|G|491
4V5B|1|CB|A|492
4V5B|1|CB|G|493

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CS

50S RIBOSOMAL PROTEIN L22