HL_4V5B_127

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

4V5B|1|CB|U|958, 4V5B|1|CB|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_127 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1491

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V5B|1|CB|U|955
4V5B|1|CB|G|956
4V5B|1|CB|C|957
4V5B|1|CB|U|958
4V5B|1|CB|A|959
4V5B|1|CB|A|960
4V5B|1|CB|C|961
4V5B|1|CB|G|962

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CA

5S ribosomal RNA; 5S rRNA

Chain CM

50S RIBOSOMAL PROTEIN L16