HL_4V5B_137

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGCGACGGUUGUCC

Length

14 nucleotides

Bulged bases

4V5B|1|CB|A|1453, 4V5B|1|CB|G|1459, 4V5B|1|CB|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_137 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3527

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

4V5B|1|CB|G|1449
4V5B|1|CB|G|1450
4V5B|1|CB|C|1451
4V5B|1|CB|G|1452
4V5B|1|CB|A|1453
4V5B|1|CB|C|1454
4V5B|1|CB|G|1455
4V5B|1|CB|G|1456
4V5B|1|CB|U|1457
4V5B|1|CB|U|1458
4V5B|1|CB|G|1459
4V5B|1|CB|U|1460
4V5B|1|CB|C|1461
4V5B|1|CB|C|1462

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CN

50S RIBOSOMAL PROTEIN L17