HL_4V5B_138

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

4V5B|1|CB|C|1493, 4V5B|1|CB|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_138 not in the Motif Atlas

Homologous match to HL_7RQB_038

Geometric discrepancy: 0.2082

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

4V5B|1|CB|G|1492
4V5B|1|CB|C|1493
4V5B|1|CB|A|1494
4V5B|1|CB|A|1495
4V5B|1|CB|A|1496
4V5B|1|CB|U|1497
4V5B|1|CB|C|1498

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CC

50S RIBOSOMAL PROTEIN L2