HL_4V5B_145

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

4V5B|1|CB|A|1780, 4V5B|1|CB|U|1781, 4V5B|1|CB|U|1782, 4V5B|1|CB|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_145 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.2001

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4V5B|1|CB|U|1777
4V5B|1|CB|U|1778
4V5B|1|CB|U|1779
4V5B|1|CB|A|1780
4V5B|1|CB|U|1781
4V5B|1|CB|U|1782
4V5B|1|CB|A|1783
4V5B|1|CB|A|1784
4V5B|1|CB|A|1785
4V5B|1|CB|A|1786
4V5B|1|CB|A|1787

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain C2

50S RIBOSOMAL PROTEIN L34

Chain CC

50S RIBOSOMAL PROTEIN L2