HL_4V5B_158

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_158 not in the Motif Atlas

Homologous match to HL_5J7L_191

Geometric discrepancy: 0.1755

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V5B|1|CB|C|2374
4V5B|1|CB|G|2375
4V5B|1|CB|A|2376
4V5B|1|CB|A|2377
4V5B|1|CB|A|2378
4V5B|1|CB|G|2379

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain C1

50S RIBOSOMAL PROTEIN L33

Chain CO

50S RIBOSOMAL PROTEIN L18

Chain CW

50S RIBOSOMAL PROTEIN L27