HL_4V5B_165

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

AUGCCAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_165 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3719

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V5B|1|CB|A|2700
4V5B|1|CB|U|2701
4V5B|1|CB|G|2702
4V5B|1|CB|C|2703
4V5B|1|CB|C|2704
4V5B|1|CB|A|2705
4V5B|1|CB|A|2706
4V5B|1|CB|U|2707

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CN

50S RIBOSOMAL PROTEIN L17