HL_4V5B_188

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GCUAACGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_188 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3741

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V5B|1|DA|G|861
4V5B|1|DA|C|862
4V5B|1|DA|U|863
4V5B|1|DA|A|864
4V5B|1|DA|A|865
4V5B|1|DA|C|866
4V5B|1|DA|G|867
4V5B|1|DA|C|868

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DB

30S RIBOSOMAL PROTEIN S2

Chain DE

30S RIBOSOMAL PROTEIN S5

Chain DH

30S RIBOSOMAL PROTEIN S8