HL_4V5B_224

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CCGUGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_224 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2362

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V5B|1|CB|C|461
4V5B|1|CB|C|462
4V5B|1|CB|G|463
4V5B|1|CB|U|464
4V5B|1|CB|G|465
4V5B|1|CB|A|466
4V5B|1|CB|G|467
4V5B|1|CB|G|468

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain C2

50S RIBOSOMAL PROTEIN L34

Chain CE

50S RIBOSOMAL PROTEIN L4

Chain CT

50S RIBOSOMAL PROTEIN L23