HL_4V5B_235

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UGGGCGCAAGCCUGA

Length

15 nucleotides

Bulged bases

4V5B|1|DA|C|381, 4V5B|1|DA|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_235 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3965

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

4V5B|1|DA|U|375
4V5B|1|DA|G|376
4V5B|1|DA|G|377
4V5B|1|DA|G|378
4V5B|1|DA|C|379
4V5B|1|DA|G|380
4V5B|1|DA|C|381
4V5B|1|DA|A|382
4V5B|1|DA|A|383
4V5B|1|DA|G|384
4V5B|1|DA|C|385
4V5B|1|DA|C|386
4V5B|1|DA|U|387
4V5B|1|DA|G|388
4V5B|1|DA|A|389

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DP

30S RIBOSOMAL PROTEIN S16