HL_4V5B_243

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CAGUGAUAAACUG

Length

13 nucleotides

Bulged bases

4V5B|1|DA|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_243 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3496

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

4V5B|1|DA|C|1162
4V5B|1|DA|A|1163
4V5B|1|DA|G|1164
4V5B|1|DA|U|1165
4V5B|1|DA|G|1166
4V5B|1|DA|A|1167
4V5B|1|DA|U|1168
4V5B|1|DA|A|1169
4V5B|1|DA|A|1170
4V5B|1|DA|A|1171
4V5B|1|DA|C|1172
4V5B|1|DA|U|1173
4V5B|1|DA|G|1174

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DB

30S RIBOSOMAL PROTEIN S2

Chain DG

30S RIBOSOMAL PROTEIN S7