HL_4V5D_006
3D structure
- PDB id
- 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GGUAAUGGC
- Length
- 9 nucleotides
- Bulged bases
- 4V5D|1|AA|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5D_006 not in the Motif Atlas
- Homologous match to HL_4LFB_006
- Geometric discrepancy: 0.1122
- The information below is about HL_4LFB_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_84299.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
4V5D|1|AA|G|259
4V5D|1|AA|G|260
4V5D|1|AA|U|261
4V5D|1|AA|A|262
4V5D|1|AA|A|263
4V5D|1|AA|U|264
4V5D|1|AA|G|265
4V5D|1|AA|G|266
4V5D|1|AA|C|267
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AQ
- 30S RIBOSOMAL PROTEIN S17
- Chain AT
- 30S RIBOSOMAL PROTEIN S20
Coloring options: