3D structure

PDB id
4V5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
GGUAAUGGC
Length
9 nucleotides
Bulged bases
4V5D|1|AA|G|266
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V5D_006 not in the Motif Atlas
Homologous match to HL_4LFB_006
Geometric discrepancy: 0.1122
The information below is about HL_4LFB_006
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_84299.4
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
9

Unit IDs

4V5D|1|AA|G|259
4V5D|1|AA|G|260
4V5D|1|AA|U|261
4V5D|1|AA|A|262
4V5D|1|AA|A|263
4V5D|1|AA|U|264
4V5D|1|AA|G|265
4V5D|1|AA|G|266
4V5D|1|AA|C|267

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AQ
30S RIBOSOMAL PROTEIN S17
Chain AT
30S RIBOSOMAL PROTEIN S20

Coloring options:


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