HL_4V5D_063
3D structure
- PDB id
- 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAUGCAAAC
- Length
- 10 nucleotides
- Bulged bases
- 4V5D|1|BA|U|747, 4V5D|1|BA|A|751
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5D_063 not in the Motif Atlas
- Homologous match to HL_7RQB_023
- Geometric discrepancy: 0.0675
- The information below is about HL_7RQB_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.6
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V5D|1|BA|G|744
4V5D|1|BA|G|745
4V5D|1|BA|A|746
4V5D|1|BA|U|747
4V5D|1|BA|G|748
4V5D|1|BA|C|749
4V5D|1|BA|A|750
4V5D|1|BA|A|751
4V5D|1|BA|A|752
4V5D|1|BA|C|753
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B5
- 50S RIBOSOMAL PROTEIN L32
- Chain B7
- 50S RIBOSOMAL PROTEIN L34
- Chain BE
- 50S RIBOSOMAL PROTEIN L3
- Chain BW
- 50S RIBOSOMAL PROTEIN L22
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