HL_4V5F_240

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCUUAGAAGCAGC

Length

13 nucleotides

Bulged bases

4V5F|1|DA|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5F_240 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.3834

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V5F|1|DA|G|1063
4V5F|1|DA|C|1064
4V5F|1|DA|U|1065
4V5F|1|DA|U|1066
4V5F|1|DA|A|1067
4V5F|1|DA|G|1068
4V5F|1|DA|A|1069
4V5F|1|DA|A|1070
4V5F|1|DA|G|1071
4V5F|1|DA|C|1072
4V5F|1|DA|A|1073
4V5F|1|DA|G|1074
4V5F|1|DA|C|1075

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CY

ELONGATION FACTOR G

Chain DK

50S RIBOSOMAL PROTEIN L11

Chain DQ

50S RIBOSOMAL PROTEIN L16