HL_4V5G_230
3D structure
- PDB id
- 4V5G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the 70S ribosome bound to EF-Tu and tRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAUUGAAAAUCC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5G_230 not in the Motif Atlas
- Homologous match to HL_7OSM_128
- Geometric discrepancy: 0.2447
- The information below is about HL_7OSM_128
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25222.2
- Basepair signature
- cWW-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4V5G|1|AV|G|29
4V5G|1|AV|G|30
4V5G|1|AV|A|31
4V5G|1|AV|U|32
4V5G|1|AV|U|33
4V5G|1|AV|G|34
4V5G|1|AV|A|35
4V5G|1|AV|A|36
4V5G|1|AV|A|37
4V5G|1|AV|A|38
4V5G|1|AV|U|39
4V5G|1|AV|C|40
4V5G|1|AV|C|41
Current chains
- Chain AV
- E-SITE TRNA PHE OR P-SITE TRNA PHE
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- 30S RIBOSOMAL PROTEIN S9
- Chain AM
- 30S RIBOSOMAL PROTEIN S13
- Chain AW
- Transfer RNA; tRNA
- Chain AX
- MRNA
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