HL_4V5H_029

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

4V5H|1|AA|C|1322

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5H_029 not in the Motif Atlas

Homologous match to HL_5J7L_028

Geometric discrepancy: 0.3724

The information below is about HL_5J7L_028

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V5H|1|AA|C|1314
4V5H|1|AA|U|1315
4V5H|1|AA|G|1316
4V5H|1|AA|C|1317
4V5H|1|AA|A|1318
4V5H|1|AA|A|1319
4V5H|1|AA|C|1320
4V5H|1|AA|U|1321
4V5H|1|AA|C|1322
4V5H|1|AA|G|1323

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AM

30S RIBOSOMAL PROTEIN S13

Chain AN

30S RIBOSOMAL PROTEIN S14

Chain AS

30S RIBOSOMAL PROTEIN S19