HL_4V5H_033

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

4V5H|1|AV|G|18, 4V5H|1|AV|G|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5H_033 not in the Motif Atlas

Homologous match to HL_5HR6_001

Geometric discrepancy: 0.4472

The information below is about HL_5HR6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4V5H|1|AV|C|13
4V5H|1|AV|A|14
4V5H|1|AV|G|15
4V5H|1|AV|C|16
4V5H|1|AV|C|17
4V5H|1|AV|U|17|||A
4V5H|1|AV|G|18
4V5H|1|AV|G|19
4V5H|1|AV|U|20
4V5H|1|AV|A|21
4V5H|1|AV|G|22

Current chains

Chain AV

P-SITE TRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BF

50S RIBOSOMAL PROTEIN L5