HL_4V5H_063

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

4V5H|1|BB|U|958, 4V5H|1|BB|C|961

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5H_063 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.158

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V5H|1|BB|U|955
4V5H|1|BB|G|956
4V5H|1|BB|C|957
4V5H|1|BB|U|958
4V5H|1|BB|A|959
4V5H|1|BB|A|960
4V5H|1|BB|C|961
4V5H|1|BB|G|962

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BM

50S RIBOSOMAL PROTEIN L16