HL_4V5H_082

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

4V5H|1|BB|A|1780, 4V5H|1|BB|U|1781, 4V5H|1|BB|U|1782, 4V5H|1|BB|A|1786

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5H_082 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.1275

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4V5H|1|BB|U|1777
4V5H|1|BB|U|1778
4V5H|1|BB|U|1779
4V5H|1|BB|A|1780
4V5H|1|BB|U|1781
4V5H|1|BB|U|1782
4V5H|1|BB|A|1783
4V5H|1|BB|A|1784
4V5H|1|BB|A|1785
4V5H|1|BB|A|1786
4V5H|1|BB|A|1787

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain AZ

POLY-ALA NASCENT CHAIN

Chain B6

50S RIBOSOMAL PROTEIN L34

Chain BC

50S RIBOSOMAL PROTEIN L2