HL_4V5H_085

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

4V5H|1|BB|A|1913

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5H_085 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.3236

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5H|1|BB|G|1910
4V5H|1|BB|U|1911
4V5H|1|BB|A|1912
4V5H|1|BB|A|1913
4V5H|1|BB|C|1914
4V5H|1|BB|U|1915
4V5H|1|BB|A|1916
4V5H|1|BB|U|1917
4V5H|1|BB|A|1918
4V5H|1|BB|A|1919
4V5H|1|BB|C|1920

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

Transfer RNA; tRNA