HL_4V5H_086

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4V5H|1|BB|U|1955

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5H_086 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1301

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V5H|1|BB|G|1949
4V5H|1|BB|G|1950
4V5H|1|BB|U|1951
4V5H|1|BB|A|1952
4V5H|1|BB|A|1953
4V5H|1|BB|G|1954
4V5H|1|BB|U|1955
4V5H|1|BB|U|1956
4V5H|1|BB|C|1957

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BK

50S RIBOSOMAL PROTEIN L14