HL_4V5H_087

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V5H|1|BB|A|2030, 4V5H|1|BB|A|2031, 4V5H|1|BB|G|2032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5H_087 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1887

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

4V5H|1|BB|G|2027
4V5H|1|BB|U|2028
4V5H|1|BB|G|2029
4V5H|1|BB|A|2030
4V5H|1|BB|A|2031
4V5H|1|BB|G|2032
4V5H|1|BB|A|2033
4V5H|1|BB|U|2034
4V5H|1|BB|G|2035
4V5H|1|BB|C|2036

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B3

50S RIBOSOMAL PROTEIN L32

Chain BD

50S RIBOSOMAL PROTEIN L3

Chain BQ

50S RIBOSOMAL PROTEIN L20