HL_4V5J_036
3D structure
- PDB id
- 4V5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAUUGAAAAUCC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5J_036 not in the Motif Atlas
- Homologous match to HL_6GSL_221
- Geometric discrepancy: 0.5796
- The information below is about HL_6GSL_221
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06285.3
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V5J|1|AW|G|29
4V5J|1|AW|G|30
4V5J|1|AW|A|31
4V5J|1|AW|U|32
4V5J|1|AW|U|33
4V5J|1|AW|G|34
4V5J|1|AW|A|35
4V5J|1|AW|A|36
4V5J|1|AW|A|37
4V5J|1|AW|A|38
4V5J|1|AW|U|39
4V5J|1|AW|C|40
4V5J|1|AW|C|41
Current chains
- Chain AW
- E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AG
- 30S RIBOSOMAL PROTEIN S7
- Chain AK
- 30S RIBOSOMAL PROTEIN S11
- Chain AV
- Transfer RNA; tRNA
- Chain AX
- MRNA
Coloring options: