HL_4V5K_185

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5K_185 not in the Motif Atlas

Geometric match to HL_4V88_190

Geometric discrepancy: 0.3851

The information below is about HL_4V88_190

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91015.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

4V5K|1|DA|U|1720
4V5K|1|DA|G|1721
4V5K|1|DA|A|1722
4V5K|1|DA|U|1739
4V5K|1|DA|G|1740
4V5K|1|DA|A|1741
4V5K|1|DA|G|1742

Current chains

Chain DA

23S ribosomal RNA

Nearby chains