Motif HL_91015.1 Version HL_91015.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_190 | 4V88 | 0.4331 | 1 | UNCG variation (H) | A6 | SSU rRNA | C | 230 | U | 231 | C | 233 | G | 234 | G | 235 | ncWW | |
| 2 | HL_8S95_003 | 8S95 | 0.3292 | 2 | UNCG variation | C | Enterovirus 5' cloverleaf cis-acting replication element | C | 67 | C | 68 | C | 70 | G | 71 | G | 73 | cWW | ncWH |
| 3 | HL_6VMY_004 | 6VMY | 0.0000 | 2 | UNCG variation | A | Cobalamin riboswitch | C | 287 | C | 288 | A | 290 | G | 291 | G | 293 | cWW | ncWH |
| 4 | HL_5WTI_001 | 5WTI | 0.3593 | 2 | B | RNA (123-MER) | C | 12 | U | 13 | U | 15 | U | 16 | G | 18 | cWW | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUCGG | 1 |
| CCACGUG | 1 |
| CCAAGCG | 1 |
| CUUUUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCG | 1 |
| CACGU | 1 |
| CAAGC | 1 |
| UUUUG | 1 |
- Annotations
-
- UNCG variation (2)
- UNCG variation (H) (1)
- (1)
- Basepair signature
- cWW-cWH-F
- Heat map statistics
- Min 0.33 | Avg 0.32 | Max 0.53
Coloring options: