Motif HL_91015.1 Version HL_91015.1 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5WTI_001 | 5WTI | 0.3593 | 2 | B | RNA (123-MER) | C | 12 | U | 13 | U | 15 | U | 16 | G | 18 | cWW | cWH |
| 2 | HL_6VMY_004 | 6VMY | 0.0000 | 2 | A | Cobalamin riboswitch | C | 287 | C | 288 | A | 290 | G | 291 | G | 293 | cWW | ncWH |
| 3 | HL_8S95_003 | 8S95 | 0.3292 | 2 | C | Lysine tRNA scaffold,Poliovirus cloverleaf RNA | C | 67 | C | 68 | C | 70 | G | 71 | G | 73 | cWW | ncWH |
| 4 | HL_4V88_190 | 4V88 | 0.4331 | 1 | A6 | SSU rRNA | C | 230 | U | 231 | C | 233 | G | 234 | G | 235 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUUUGG | 1 |
| CCAAGCG | 1 |
| CCACGUG | 1 |
| CUUCGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUUG | 1 |
| CAAGC | 1 |
| CACGU | 1 |
| UUCG | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWH-F
- Heat map statistics
- Min 0.33 | Avg 0.32 | Max 0.53
Coloring options: