HL_4V5M_015

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5M_015 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.0912

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V5M|1|AA|C|689
4V5M|1|AA|G|690
4V5M|1|AA|G|691
4V5M|1|AA|U|692
4V5M|1|AA|G|693
4V5M|1|AA|A|694
4V5M|1|AA|A|695
4V5M|1|AA|A|696
4V5M|1|AA|U|697
4V5M|1|AA|G|698

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AG

30S RIBOSOMAL PROTEIN S7

Chain AK

30S RIBOSOMAL PROTEIN S11

Chain AX

MRNA