3D structure

PDB id
4V5M (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.8 Å

Loop

Sequence
CAGCCUGGUAG
Length
11 nucleotides
Bulged bases
4V5M|1|AV|C|17, 4V5M|1|AV|U|17|||A, 4V5M|1|AV|G|18, 4V5M|1|AV|G|19, 4V5M|1|AV|U|20
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V5M_032 not in the Motif Atlas
Homologous match to HL_5B63_003
Geometric discrepancy: 0.185
The information below is about HL_5B63_003
Detailed Annotation
tRNA D-loop
Broad Annotation
No text annotation
Motif group
HL_20811.4
Basepair signature
cWW-cWS-F
Number of instances in this motif group
14

Unit IDs

4V5M|1|AV|C|13
4V5M|1|AV|A|14
4V5M|1|AV|G|15
4V5M|1|AV|C|16
4V5M|1|AV|C|17
4V5M|1|AV|U|17|||A
4V5M|1|AV|G|18
4V5M|1|AV|G|19
4V5M|1|AV|U|20
4V5M|1|AV|A|21
4V5M|1|AV|G|22

Current chains

Chain AV
TRNA

Nearby chains

Chain BA
Large subunit ribosomal RNA; LSU rRNA
Chain BC
50S RIBOSOMAL PROTEIN L1

Coloring options:


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