HL_4V5M_032
3D structure
- PDB id
- 4V5M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.8 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 4V5M|1|AV|C|17, 4V5M|1|AV|U|17|||A, 4V5M|1|AV|G|18, 4V5M|1|AV|G|19, 4V5M|1|AV|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5M_032 not in the Motif Atlas
- Homologous match to HL_5B63_003
- Geometric discrepancy: 0.185
- The information below is about HL_5B63_003
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
4V5M|1|AV|C|13
4V5M|1|AV|A|14
4V5M|1|AV|G|15
4V5M|1|AV|C|16
4V5M|1|AV|C|17
4V5M|1|AV|U|17|||A
4V5M|1|AV|G|18
4V5M|1|AV|G|19
4V5M|1|AV|U|20
4V5M|1|AV|A|21
4V5M|1|AV|G|22
Current chains
- Chain AV
- TRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- 50S RIBOSOMAL PROTEIN L1
Coloring options: