HL_4V5M_032

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

4V5M|1|AV|C|17, 4V5M|1|AV|U|17|||A, 4V5M|1|AV|G|18, 4V5M|1|AV|G|19, 4V5M|1|AV|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5M_032 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0.185

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4V5M|1|AV|C|13
4V5M|1|AV|A|14
4V5M|1|AV|G|15
4V5M|1|AV|C|16
4V5M|1|AV|C|17
4V5M|1|AV|U|17|||A
4V5M|1|AV|G|18
4V5M|1|AV|G|19
4V5M|1|AV|U|20
4V5M|1|AV|A|21
4V5M|1|AV|G|22

Current chains

Chain AV

TRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BC

50S RIBOSOMAL PROTEIN L1