HL_4V5M_038

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5M_038 not in the Motif Atlas

Homologous match to HL_9DFE_004

Geometric discrepancy: 0.3271

The information below is about HL_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71391.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V5M|1|BA|G|139
4V5M|1|BA|G|139|||A
4V5M|1|BA|G|140
4V5M|1|BA|A|141
4V5M|1|BA|A|142
4V5M|1|BA|C|142|||A

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S RIBOSOMAL PROTEIN L29

Chain BX

50S RIBOSOMAL PROTEIN L23