HL_4V5M_065

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

4V5M|1|BA|A|1174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5M_065 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3115

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V5M|1|BA|G|1171
4V5M|1|BA|G|1173
4V5M|1|BA|A|1174
4V5M|1|BA|U|1175
4V5M|1|BA|G|1176
4V5M|1|BA|A|1177
4V5M|1|BA|C|1178

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains