HL_4V5M_080
3D structure
- PDB id
- 4V5M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.8 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 4V5M|1|BA|A|1780, 4V5M|1|BA|C|1781, 4V5M|1|BA|C|1782, 4V5M|1|BA|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5M_080 not in the Motif Atlas
- Homologous match to HL_5J7L_178
- Geometric discrepancy: 0.081
- The information below is about HL_5J7L_178
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01962.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
4V5M|1|BA|U|1777
4V5M|1|BA|U|1778
4V5M|1|BA|U|1779
4V5M|1|BA|A|1780
4V5M|1|BA|C|1781
4V5M|1|BA|C|1782
4V5M|1|BA|A|1783
4V5M|1|BA|A|1784
4V5M|1|BA|A|1785
4V5M|1|BA|A|1786
4V5M|1|BA|A|1787
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B7
- 50S RIBOSOMAL PROTEIN L34
- Chain BD
- 50S RIBOSOMAL PROTEIN L2
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