HL_4V5M_084

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4V5M|1|BA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5M_084 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1018

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V5M|1|BA|G|1949
4V5M|1|BA|G|1950
4V5M|1|BA|U|1951
4V5M|1|BA|A|1952
4V5M|1|BA|A|1953
4V5M|1|BA|G|1954
4V5M|1|BA|U|1955
4V5M|1|BA|U|1956
4V5M|1|BA|C|1957

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BO

50S RIBOSOMAL PROTEIN L14