HL_4V5M_109

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

CCGACGAGG

Length

9 nucleotides

Bulged bases

4V5M|1|AA|C|470

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5M_109 not in the Motif Atlas

Geometric match to HL_5UD5_002

Geometric discrepancy: 0.3647

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_87306.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V5M|1|AA|C|457
4V5M|1|AA|C|458
4V5M|1|AA|G|460
4V5M|1|AA|A|461
4V5M|1|AA|C|470
4V5M|1|AA|G|471
4V5M|1|AA|A|472
4V5M|1|AA|G|473
4V5M|1|AA|G|474

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16