HL_4V5M_114

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

CCGCAAGG

Length

8 nucleotides

Bulged bases

4V5M|1|BA|A|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5M_114 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.321

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4V5M|1|BA|C|542
4V5M|1|BA|C|543
4V5M|1|BA|G|544
4V5M|1|BA|C|545
4V5M|1|BA|A|547
4V5M|1|BA|A|548
4V5M|1|BA|G|549
4V5M|1|BA|G|551

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BV

50S RIBOSOMAL PROTEIN L21