HL_4V5O_003

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

CUAAUUG

Length

7 nucleotides

Bulged bases

4V5O|1|AA|U|152, 4V5O|1|AA|U|153

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5O_003 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.2861

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V5O|1|AA|C|148
4V5O|1|AA|U|149
4V5O|1|AA|A|150
4V5O|1|AA|A|151
4V5O|1|AA|U|152
4V5O|1|AA|U|153
4V5O|1|AA|G|154

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AP

RPS24E

Chain AY

RPS6E