HL_4V5O_009
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- UUAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5O_009 not in the Motif Atlas
- Homologous match to HL_4V88_194
- Geometric discrepancy: 0.1829
- The information below is about HL_4V88_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50142.3
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4V5O|1|AA|U|359
4V5O|1|AA|U|360
4V5O|1|AA|A|361
4V5O|1|AA|G|362
4V5O|1|AA|G|363
4V5O|1|AA|G|364
Current chains
- Chain AA
- 18S RRNA
Nearby chains
- Chain AD
- RIBOSOMAL PROTEIN S4 CONTAINING PROTEIN
- Chain AE
- RIBOSOMAL PROTEIN S5 CONTAINING PROTEIN
- Chain AH
- RIBOSOMAL PROTEIN S8 CONTAINING PROTEIN
- Chain AL
- 40S RIBOSOMAL PROTEIN S12
- Chain AQ
- RIBOSOMAL PROTEIN S17 CONTAINING PROTEIN
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