HL_4V5O_010
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 4V5O|1|AA|G|394
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5O_010 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.3523
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V5O|1|AA|C|384
4V5O|1|AA|C|385
4V5O|1|AA|U|386
4V5O|1|AA|G|387
4V5O|1|AA|A|388
4V5O|1|AA|G|389
4V5O|1|AA|A|390
4V5O|1|AA|A|391
4V5O|1|AA|A|392
4V5O|1|AA|C|393
4V5O|1|AA|G|394
4V5O|1|AA|G|395
Current chains
- Chain AA
- 18S RRNA
Nearby chains
- Chain A2
- 40S RIBOSOMAL PROTEIN S8
- Chain AP
- RPS24E
- Chain AW
- 40S RIBOSOMAL PROTEIN S4
- Chain AY
- RPS6E
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