HL_4V5O_012

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

4V5O|1|AA|A|444, 4V5O|1|AA|U|446, 4V5O|1|AA|C|447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5O_012 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.1596

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5O|1|AA|U|442
4V5O|1|AA|A|443
4V5O|1|AA|A|444
4V5O|1|AA|U|445
4V5O|1|AA|U|446
4V5O|1|AA|C|447
4V5O|1|AA|A|448

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AP

RPS24E

Chain AW

40S RIBOSOMAL PROTEIN S4

Chain AY

RPS6E