HL_4V5O_019

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5O_019 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.3074

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4V5O|1|AA|A|878
4V5O|1|AA|G|879
4V5O|1|AA|G|880
4V5O|1|AA|U|881
4V5O|1|AA|G|882
4V5O|1|AA|A|883
4V5O|1|AA|A|884
4V5O|1|AA|A|885
4V5O|1|AA|U|886
4V5O|1|AA|U|887

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AG

RIBOSOMAL PROTEIN S7 CONTAINING PROTEIN

Chain AK

RPS14E