HL_4V5O_045

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

4V5O|1|BA|G|394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04032.1

Basepair signature

cWW-R-tWH-R-tWH-R-R-R

Number of instances in this motif group

2

Unit IDs

4V5O|1|BA|C|384
4V5O|1|BA|C|385
4V5O|1|BA|U|386
4V5O|1|BA|G|387
4V5O|1|BA|A|388
4V5O|1|BA|G|389
4V5O|1|BA|A|390
4V5O|1|BA|A|391
4V5O|1|BA|A|392
4V5O|1|BA|C|393
4V5O|1|BA|G|394
4V5O|1|BA|G|395

Current chains

Chain BA

18S RRNA

Nearby chains

Chain B2

40S RIBOSOMAL PROTEIN S8

Chain BP

RPS24E

Chain BW

40S RIBOSOMAL PROTEIN S4

Chain BY

RPS6E