HL_4V5O_060

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

4V5O|1|BA|A|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20030.1

Basepair signature

cWW-R-R-R-R-R-R

Number of instances in this motif group

2

Unit IDs

4V5O|1|BA|G|1160
4V5O|1|BA|A|1161
4V5O|1|BA|C|1162
4V5O|1|BA|U|1163
4V5O|1|BA|C|1164
4V5O|1|BA|A|1165
4V5O|1|BA|A|1166
4V5O|1|BA|C|1167
4V5O|1|BA|A|1168
4V5O|1|BA|C|1169

Current chains

Chain BA

18S RRNA

Nearby chains

Chain B9

RPS31E

Chain BI

RPS16E, 40S RIBOSOMAL PROTEIN RPS16E

Chain BJ

RIBOSOMAL PROTEIN S10 CONTAINING PROTEIN

Chain BN

RPS29E