3D structure

PDB id
4V5O (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.93 Å

Loop

Sequence
GUCAUCAGC
Length
9 nucleotides
Bulged bases
4V5O|1|BA|G|1573
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_78457.2
Basepair signature
cWW-tWH-R-tSH-R
Number of instances in this motif group
8

Unit IDs

4V5O|1|BA|G|1566
4V5O|1|BA|U|1567
4V5O|1|BA|C|1568
4V5O|1|BA|A|1569
4V5O|1|BA|U|1570
4V5O|1|BA|C|1571
4V5O|1|BA|A|1572
4V5O|1|BA|G|1573
4V5O|1|BA|C|1574

Current chains

Chain BA
18S RRNA

Nearby chains

Chain BI
RPS16E, 40S RIBOSOMAL PROTEIN RPS16E
Chain BJ
RIBOSOMAL PROTEIN S10 CONTAINING PROTEIN
Chain BN
RPS29E
Chain BT
RPS19E

Coloring options:

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