Motif HL_78457.2 Version HL_78457.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5X2G_003 | 5X2G | 0.7957 | 1 | B | sgRNA | G | 73 | U | 74 | U | 75 | A | 76 | C | 77 | A | 78 | A | 79 | C | 81 | cWW | tWH | |
| 2 | HL_4V5O_068 | 4V5O | 0.7910 | 1 | BA | SSU rRNA | G | 1566 | U | 1567 | C | 1568 | A | 1569 | U | 1570 | C | 1571 | A | 1572 | C | 1574 | cWW | ||
| 3 | HL_4Y4O_137 | 4Y4O | 0.1275 | 2 | 2A | LSU rRNA | G | 1389 | U | 1390 | U | 1391 | A | 1392 | A | 1393 | U | 1394 | A | 1395 | C | 1398 | cWW | tWH | |
| 4 | HL_5J7L_168 | 5J7L | 0.1012 | 2 | DA | LSU rRNA | G | 1389 | U | 1390 | U | 1391 | A | 1392 | A | 1393 | U | 1394 | A | 1395 | C | 1398 | cWW | tWH | |
| 5 | HL_4V8P_117 | 4V8P | 0.0000 | 2 | D1 | LSU rRNA | G | 1624 | U | 1625 | U | 1626 | A | 1627 | A | 1628 | U | 1629 | A | 1630 | C | 1633 | cWW | tWH | |
| 6 | HL_4V9F_037 | 4V9F | 0.0690 | 2 | 0 | LSU rRNA | G | 1498 | U | 1499 | U | 1500 | A | 1501 | A | 1502 | U | 1503 | A | 1504 | C | 1507 | cWW | tWH | |
| 7 | HL_4WF9_035 | 4WF9 | 0.1472 | 2 | X | LSU rRNA | G | 1426 | U | 1427 | U | 1428 | G | 1429 | A | 1430 | U | 1431 | A | 1432 | C | 1435 | cWW | tWH | |
| 8 | HL_5TBW_035 | 5TBW | 0.4283 | 2 | 1 | LSU rRNA | G | 1599 | U | 1600 | U | 1601 | A | 1602 | A | 1603 | G | 1604 | A | 1605 | C | 1608 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAUAUUC | 4 |
| GUUACAAUC | 1 |
| GUCAUCAGC | 1 |
| GUUGAUAUUC | 1 |
| GUUAAGAUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUAUU | 4 |
| UUACAAU | 1 |
| UCAUCAG | 1 |
| UUGAUAUU | 1 |
| UUAAGAUU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tWH-R-tSH-R
- Heat map statistics
- Min 0.07 | Avg 0.44 | Max 0.97
Coloring options: