RNA 3D Hub //

Motif HL_78457.2 Version HL_78457.2 of this group appears in releases 3.3 to 3.11

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 81-82-7
1 HL_5X2G_0035X2G0.79571BsgRNAG73U74U75A76C77A78A79C81cWWtWH
2 HL_4V5O_0684V5O0.79101BA SSU rRNAG1566U1567C1568A1569U1570C1571A1572C1574cWW
3 HL_4Y4O_1374Y4O0.127522A LSU rRNAG1389U1390U1391A1392A1393U1394A1395C1398cWWtWH
4 HL_5J7L_1685J7L0.10122DA LSU rRNAG1389U1390U1391A1392A1393U1394A1395C1398cWWtWH
5 HL_4V8P_1174V8P0.00002D1 LSU rRNAG1624U1625U1626A1627A1628U1629A1630C1633cWWtWH
6 HL_4V9F_0374V9F0.069020 LSU rRNAG1498U1499U1500A1501A1502U1503A1504C1507cWWtWH
7 HL_4WF9_0354WF90.14722X LSU rRNAG1426U1427U1428G1429A1430U1431A1432C1435cWWtWH
8 HL_5TBW_0355TBW0.428321 LSU rRNAG1599U1600U1601A1602A1603G1604A1605C1608cWWtWH

3D structures

Complete motif including flanking bases
SequenceCounts
GUUAAUAUUC4
GUUACAAUC1
GUCAUCAGC1
GUUGAUAUUC1
GUUAAGAUUC1
Non-Watson-Crick part of the motif
SequenceCounts
UUAAUAUU4
UUACAAU1
UCAUCAG1
UUGAUAUU1
UUAAGAUU1

Release history

Release3.33.43.53.63.73.83.93.103.11
Date2018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-19
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (8)
    • Basepair signature
    cWW-tWH-R-tSH-R
    Heat map statistics
    Min 0.07 | Avg 0.44 | Max 0.97
    Help

    Coloring options:

    HL_5X2G_003:HL_5X2G_003 = 0HL_5X2G_003:HL_4V5O_068 = 0.7703HL_5X2G_003:HL_4Y4O_137 = 0.7818HL_5X2G_003:HL_5J7L_168 = 0.7915HL_5X2G_003:HL_4V8P_117 = 0.7957HL_5X2G_003:HL_4V9F_037 = 0.8144HL_5X2G_003:HL_4WF9_035 = 0.8584HL_5X2G_003:HL_5TBW_035 = 0.8828HL_4V5O_068:HL_5X2G_003 = 0.7703HL_4V5O_068:HL_4V5O_068 = 0HL_4V5O_068:HL_4Y4O_137 = 0.7715HL_4V5O_068:HL_5J7L_168 = 0.7865HL_4V5O_068:HL_4V8P_117 = 0.791HL_4V5O_068:HL_4V9F_037 = 0.8039HL_4V5O_068:HL_4WF9_035 = 0.8607HL_4V5O_068:HL_5TBW_035 = 0.9739HL_4Y4O_137:HL_5X2G_003 = 0.7818HL_4Y4O_137:HL_4V5O_068 = 0.7715HL_4Y4O_137:HL_4Y4O_137 = 0HL_4Y4O_137:HL_5J7L_168 = 0.0986HL_4Y4O_137:HL_4V8P_117 = 0.1275HL_4Y4O_137:HL_4V9F_037 = 0.1231HL_4Y4O_137:HL_4WF9_035 = 0.1741HL_4Y4O_137:HL_5TBW_035 = 0.4659HL_5J7L_168:HL_5X2G_003 = 0.7915HL_5J7L_168:HL_4V5O_068 = 0.7865HL_5J7L_168:HL_4Y4O_137 = 0.0986HL_5J7L_168:HL_5J7L_168 = 0HL_5J7L_168:HL_4V8P_117 = 0.1012HL_5J7L_168:HL_4V9F_037 = 0.0954HL_5J7L_168:HL_4WF9_035 = 0.1581HL_5J7L_168:HL_5TBW_035 = 0.4445HL_4V8P_117:HL_5X2G_003 = 0.7957HL_4V8P_117:HL_4V5O_068 = 0.791HL_4V8P_117:HL_4Y4O_137 = 0.1275HL_4V8P_117:HL_5J7L_168 = 0.1012HL_4V8P_117:HL_4V8P_117 = 0HL_4V8P_117:HL_4V9F_037 = 0.069HL_4V8P_117:HL_4WF9_035 = 0.1472HL_4V8P_117:HL_5TBW_035 = 0.4283HL_4V9F_037:HL_5X2G_003 = 0.8144HL_4V9F_037:HL_4V5O_068 = 0.8039HL_4V9F_037:HL_4Y4O_137 = 0.1231HL_4V9F_037:HL_5J7L_168 = 0.0954HL_4V9F_037:HL_4V8P_117 = 0.069HL_4V9F_037:HL_4V9F_037 = 0HL_4V9F_037:HL_4WF9_035 = 0.1254HL_4V9F_037:HL_5TBW_035 = 0.4288HL_4WF9_035:HL_5X2G_003 = 0.8584HL_4WF9_035:HL_4V5O_068 = 0.8607HL_4WF9_035:HL_4Y4O_137 = 0.1741HL_4WF9_035:HL_5J7L_168 = 0.1581HL_4WF9_035:HL_4V8P_117 = 0.1472HL_4WF9_035:HL_4V9F_037 = 0.1254HL_4WF9_035:HL_4WF9_035 = 0HL_4WF9_035:HL_5TBW_035 = 0.4479HL_5TBW_035:HL_5X2G_003 = 0.8828HL_5TBW_035:HL_4V5O_068 = 0.9739HL_5TBW_035:HL_4Y4O_137 = 0.4659HL_5TBW_035:HL_5J7L_168 = 0.4445HL_5TBW_035:HL_4V8P_117 = 0.4283HL_5TBW_035:HL_4V9F_037 = 0.4288HL_5TBW_035:HL_4WF9_035 = 0.4479HL_5TBW_035:HL_5TBW_035 = 0HL_5X2G_003HL_4V5O_068HL_4Y4O_137HL_5J7L_168HL_4V8P_117HL_4V9F_037HL_4WF9_035HL_5TBW_035Discrepancy0.000.200.400.600.80
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