HL_4V5Q_057

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGCAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Q_057 not in the Motif Atlas

Geometric match to HL_8KAL_001

Geometric discrepancy: 0.3185

The information below is about HL_8KAL_001

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V5Q|1|BA|C|542
4V5Q|1|BA|C|543
4V5Q|1|BA|G|544
4V5Q|1|BA|C|545
4V5Q|1|BA|A|547
4V5Q|1|BA|A|548
4V5Q|1|BA|G|549
4V5Q|1|BA|G|551

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BN

50S RIBOSOMAL PROTEIN L13

Chain BV

50S RIBOSOMAL PROTEIN L21