HL_4V5Q_101

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Q_101 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.2877

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V5Q|1|BA|C|2471
4V5Q|1|BA|G|2472
4V5Q|1|BA|U|2473
4V5Q|1|BA|C|2474
4V5Q|1|BA|C|2475
4V5Q|1|BA|A|2476
4V5Q|1|BA|C|2477
4V5Q|1|BA|A|2478
4V5Q|1|BA|G|2479

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AY

Transfer RNA; tRNA

Chain B9

50S RIBOSOMAL PROTEIN L36

Chain BQ

50S RIBOSOMAL PROTEIN L16