HL_4V5S_161

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUGGGAAGC

Length

10 nucleotides

Bulged bases

4V5S|1|DA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5S_161 not in the Motif Atlas

Geometric match to HL_8CRE_223

Geometric discrepancy: 0.2651

The information below is about HL_8CRE_223

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67079.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5S|1|DA|G|304
4V5S|1|DA|U|305
4V5S|1|DA|U|306
4V5S|1|DA|G|307
4V5S|1|DA|G|308
4V5S|1|DA|G|309
4V5S|1|DA|A|310
4V5S|1|DA|A|311
4V5S|1|DA|G|312
4V5S|1|DA|C|313

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain DY

50S RIBOSOMAL PROTEIN L24