HL_4V5Y_040

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4V5Y|1|BB|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Y_040 not in the Motif Atlas

Geometric match to HL_7A0S_006

Geometric discrepancy: 0.141

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4V5Y|1|BB|G|194
4V5Y|1|BB|A|195
4V5Y|1|BB|A|196
4V5Y|1|BB|A|197
4V5Y|1|BB|C|198
4V5Y|1|BB|A|199
4V5Y|1|BB|U|200
4V5Y|1|BB|C|201

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BL

50S ribosomal protein L15

Chain BZ

50S ribosomal protein L28