HL_4V61_006

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GGUAAUAGC

Length

9 nucleotides

Bulged bases

4V61|1|AA|G|237

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1078

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V61|1|AA|G|230
4V61|1|AA|G|231
4V61|1|AA|U|232
4V61|1|AA|A|233
4V61|1|AA|A|234
4V61|1|AA|U|235
4V61|1|AA|A|236
4V61|1|AA|G|237
4V61|1|AA|C|238

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AQ

Ribosomal Protein S17

Chain AT

Ribosomal Protein S20