HL_4V61_007

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_007 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.1011

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V61|1|AA|C|267
4V61|1|AA|G|268
4V61|1|AA|A|269
4V61|1|AA|G|270
4V61|1|AA|A|271
4V61|1|AA|G|272

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

Ribosomal Protein S4

Chain AE

Ribosomal Protein S5

Chain AL

Ribosomal Protein S12

Chain AQ

Ribosomal Protein S17