HL_4V61_015

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_015 not in the Motif Atlas

Homologous match to HL_5J7L_015

Geometric discrepancy: 0.1067

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V61|1|AA|C|637
4V61|1|AA|G|638
4V61|1|AA|G|639
4V61|1|AA|U|640
4V61|1|AA|G|641
4V61|1|AA|A|642
4V61|1|AA|A|643
4V61|1|AA|A|644
4V61|1|AA|U|645
4V61|1|AA|G|646

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

Ribosomal Protein S7

Chain AK

Ribosomal Protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA