HL_4V61_025

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

4V61|1|AA|G|1043

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_025 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1522

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

4V61|1|AA|G|1038
4V61|1|AA|U|1039
4V61|1|AA|U|1040
4V61|1|AA|A|1041
4V61|1|AA|A|1042
4V61|1|AA|G|1043
4V61|1|AA|U|1044
4V61|1|AA|C|1045

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

Ribosomal Protein S2

Chain AG

Ribosomal Protein S7